<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Week 5 HW: Protein Design Part II :: 2026a-abhinav-rajendran</title><link>https://pages.htgaa.org/2026a/abhinav-rajendran/homework/week-05-hw-protein-design-part-ii/index.html</link><description>Part 1: Generate Binders with PepMLM Sequence Preparation Retrieved WT SOD1 from UniProt P00441 and introduced A4V (position 5 in full sequence, position 4 in mature protein after Met cleavage):
WT: M A T K A V C V L K ... A4V: M A T K V V C V L K ... ^ PepMLM Results Model: PepMLM-650M (ESM-2 based, Colab, T4 GPU) | Parameters: length = 12, num_binders = 4, top_k = 3</description><generator>Hugo</generator><language>en</language><atom:link href="https://pages.htgaa.org/2026a/abhinav-rajendran/homework/week-05-hw-protein-design-part-ii/index.xml" rel="self" type="application/rss+xml"/></channel></rss>