<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Week 6 — PCR, Gibson Assembly &amp; Genetic Circuits :: 2026a-aditya-retnanto</title><link>https://pages.htgaa.org/2026a/aditya-retnanto/homework/week-06-pcr-gibson-assembly/index.html</link><description>Part A: Pre-Lab Protocol Questions 1. Phusion High-Fidelity PCR Master Mix According to the NEB product page, the Phusion master mix is built around two key features of the Phusion polymerase itself:
A Pyrococcus-like polymerase core with a 3’→5’ proofreading exonuclease — catches and corrects misincorporated bases in real time, giving ~50x lower error rate than Taq. An Sso7d processivity domain fused to the polymerase — a DNA-binding clamp that keeps the enzyme on the template, increasing speed and fidelity together. The master mix also includes dNTPs, MgCl₂ (essential cofactor for polymerase activity), and a reaction buffer optimized for Phusion.</description><generator>Hugo</generator><language>en</language><atom:link href="https://pages.htgaa.org/2026a/aditya-retnanto/homework/week-06-pcr-gibson-assembly/index.xml" rel="self" type="application/rss+xml"/></channel></rss>