<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Week 05 – Protein Design Part II :: 2026a-alya-alobaidi</title><link>https://pages.htgaa.org/2026a/alya-alobaidi/homework/week-05-hw-protein-design-part-ii/index.html</link><description>Image source: Genetic Lifehacks. https://www.geneticlifehacks.com/sod1-gene-polymorphisms/
Part 1: SOD1 Binder Peptide Design “MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ”
This is the SOD1 original sequence
The mutation A4V means:
Alanine (A) at position 4 → Valine (V)
But UniProt includes the starting M, so the alanine that changes is the 5th residue in the sequence.
1 M 2 A 3 T 4 K 5 A ← this is the one that changes 6 V We change from this MATKAV to this MATKVV</description><generator>Hugo</generator><language>en</language><atom:link href="https://pages.htgaa.org/2026a/alya-alobaidi/homework/week-05-hw-protein-design-part-ii/index.xml" rel="self" type="application/rss+xml"/></channel></rss>