Week 5 HW: Protein Design Part II :: 2026a-davi-limahttps://pages.htgaa.org/2026a/davi-lima/homework/week-05-hw-protein-design-part-ii/index.htmlPart A: SOD1 Binder Peptide Design (From Pranam) Part 1: Generate Binders with PepMLM Uniprot (P00441) Sequence: MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ Mutated (A4V) Sequence: MATVKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ The peptides are as follow: Index Binder Pseudo Perplexity 1 WHYYAAALAHKX 10.964450319068074 2 WHVVAAAVRWKE 20.08596911389436 3 KHYPVVAAELKX 8.536125306474528 4 HHSVVVALRHGE 18.149273540792894 5 FLYRWLPSRRGG n/a I’ll change the X’es to A (alanines) since Alphafold doesn’t allow X’es.Hugoen