https://pages.htgaa.org/2026a/gabriela-frajtag/homework/week-05-hw-protein-design-part-ii/index.htmlPart A: SOD1 Binder Peptide Design (From Pranam) Part 1: Generate Binders with PepMLM I first generated the mutated sequence: SOD1 A4V MATK**V**VCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ I then used the PepMLM-650M notebook to generate peptide binders conditioned on the mutant SOD1 sequence. I set the peptide length to 12 amino acids and generated candidate binders from the model output. The resulting peptides and their pseudo-perplexity values are shown below.Hugoen