<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Week 5 HW: Protein Design Part II :: 2026a-hana-sylvester</title><link>https://pages.htgaa.org/2026a/hana-sylvester/homework/week-05-hw-protein-design-part-ii/index.html</link><description>Part 1: Generate Binders with PepMLM 🐧 Human SOD1 Sequence from UniProt (154 amino acids): https://www.uniprot.org/uniprotkb/P00441/entry https://www.uniprot.org/uniprotkb/P00441/entry#sequences
Click to view Human SOD1 Sequence MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ Click to view Human SOD1 Sequence with A4V mutation which causes ALS MATKVVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ I had to manually reset the code as I was not able to change the parameters with the sliding scales. I was stuck with generating a single 15 peptide long binder at a time. Thankfully I was able to change this by editing the back end of the form, but also by forcing the code to make 4 binders that were 12 peptides long.</description><generator>Hugo</generator><language>en</language><atom:link href="https://pages.htgaa.org/2026a/hana-sylvester/homework/week-05-hw-protein-design-part-ii/index.xml" rel="self" type="application/rss+xml"/></channel></rss>