<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Week 5 HW: Protein Design part II :: 2026a-jean-colmenares</title><link>https://pages.htgaa.org/2026a/jean-colmenares/homework/week-05-hw-protein-design-part-ii/index.html</link><description>PART A: SOD1 Binder Peptide Design The sequence for the original protein is:
// sp|P00441|SODC_HUMAN Superoxide dismutase [Cu-Zn] OS=Homo sapiens OX=9606 GN=SOD1 PE=1 SV=2 MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTS AGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVV HEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ
Mutation occurs at residue 4: Alanine becomes Valine
// 1UXM_1|Chains A, B, C, D, E, F, G, H, I, J, K, L|SUPEROXIDE DISMUTASE [CU-ZN]|HOMO SAPIENS (9606) ATKVVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVS IEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ
Part 1: Generate Binders with PepMLM</description><generator>Hugo</generator><language>en</language><atom:link href="https://pages.htgaa.org/2026a/jean-colmenares/homework/week-05-hw-protein-design-part-ii/index.xml" rel="self" type="application/rss+xml"/></channel></rss>