<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Week 4 HW: Protein Design Part I continue :: 2026a-keerthana-gunaretnam</title><link>https://pages.htgaa.org/2026a/keerthana-gunaretnam/homework/week-04-hw-protein-design-part-i-continue/index.html</link><description>Open the structure of your protein in any 3D molecule visualization software: PyMol Tutorial Here (hint: ChatGPT is good at PyMol commands) Visualize the protein as “cartoon”, “ribbon” and “ball and stick”. Color the protein by secondary structure. Does it have more helices or sheets? Color the protein by residue type. What can you tell about the distribution of hydrophobic vs hydrophilic residues? Visualize the surface of the protein. Does it have any “holes” (aka binding pockets)?</description><generator>Hugo</generator><language>en</language><atom:link href="https://pages.htgaa.org/2026a/keerthana-gunaretnam/homework/week-04-hw-protein-design-part-i-continue/index.xml" rel="self" type="application/rss+xml"/></channel></rss>