Week 5 HW: Protein Design Part II

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Part A

Part 1

  • I added the protein sequence from UniProt after mutating it, and changed the parameters, as needed. The Sequence: MATKVVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ
Parameters Parameters
  • I ended up with these 4 results.
Peptide Results Peptide Results
  • I added the given peptide sequence and calculated the Pseudo Perplexity for the same.
Peptide Added Peptide Added

Part 2