<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Week 5 HW：Protein Design Part-ii :: 2026a-yuxin-wang</title><link>https://pages.htgaa.org/2026a/yuxin-wang/homework/week-05-hw-protein-design-part-ii/index.html</link><description>Part A: SOD1 Binder Peptide Design Part 1: Generate Binders with PepMLM Generate four peptides of length 12 amino acids conditioned on the mutant SOD1 sequence.
Among the generated sequences, WRYPAAAAELKK (7.61) stands out the most. It has a lower perplexity than the other generated sequences, indicating that it may be more compatible with the pocket of the SOD1 A4V mutation site in terms of chemical environment and geometric conformation.</description><generator>Hugo</generator><language>en</language><atom:link href="https://pages.htgaa.org/2026a/yuxin-wang/homework/week-05-hw-protein-design-part-ii/index.xml" rel="self" type="application/rss+xml"/></channel></rss>