<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Week 5 HW: Protein Design II :: 2026a-zeynep-begum-kara</title><link>https://pages.htgaa.org/2026a/zeynep-begum-kara/homework/week-05-protein-design-ii/index.html</link><description>Part 1: Generate Binders with PepMLM I retrieved the human SOD1 sequence from UniProt (P00441) in FASTA format.
Original canonical sequence:
&gt;sp|P00441|SODC_HUMAN Superoxide dismutase [Cu-Zn] OS=Homo sapiens OX=9606 GN=SOD1 PE=1 SV=2 MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTS AGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVV HEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ I introduced the A4V mutation by changing Alanine (A) to Valine (V) at position 4 of the mature protein sequence (index 4, 0-based).</description><generator>Hugo</generator><language>en</language><atom:link href="https://pages.htgaa.org/2026a/zeynep-begum-kara/homework/week-05-protein-design-ii/index.xml" rel="self" type="application/rss+xml"/></channel></rss>