<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Week 3: Designing a Cell-Free Reaction Composition :: paulina-liceaga</title><link>https://pages.htgaa.org/2026b/paulina-liceaga/week-03-hw-cell-free/index.html</link><description>A. COMPARE CELL-FREE REACTION COMPOSITIONS&#10;A1. Why does the concentration of potassium glutamate and magnesium glutamate differ between compositions? Which is more sensitive?&#10;The concentrations differ because each formulation was optimized for its own conditions. The lysate strain and preparation method change how much Mg²⁺ and K⁺ the extract already carries over, and the energy system matters too. Jewett &amp; Swartz (2004) had to lower Mg²⁺ when switching from PEP to pyruvate, because PEP binds Mg²⁺ more tightly (11.3 mM total in Cytomim vs about 23 mM in PANOx-SP). Olsen et al. (2026) likewise re-tuned Mg²⁺ and phosphate for each new lysate batch. The two ions also do different jobs. K⁺ is the main cation that sets ionic strength, so it is needed at roughly 80-362 mM across formulations. Mg²⁺ is a cofactor for ribosomes and polymerases, needed at about 8-10 mM.</description><generator>Hugo</generator><language>en</language><atom:link href="https://pages.htgaa.org/2026b/paulina-liceaga/week-03-hw-cell-free/index.xml" rel="self" type="application/rss+xml"/></channel></rss>